Bioinformatics Data

See the graph data for ontology information.
NCBI
Hapmap
Bioconductor Data
ENCODE Project
Human Genome Project
Personal Genome Project

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Graph Data

Ontologies
My thesis dealt in part with ontologies, so I have a bit of code to dig out which works on ontologies.  Perhaps I can mine this group of data in the future.
Note for handling hierarchical data in SQL

Gene Ontology data, available for download as MySQL database
SIC codes
NAICS codes (replacement for SIC)
Library of Congress

Networks
This is empty [...]

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Spatial Data

What follows is spatial that I have found useful.  It’s a mix of marine/oceanic data (especially around Florida), weather and demographics/census (esp US and world).

Hurricane paths
Tropical Cyclone probabilities
GIS data layers of marine ecosystems for Florida
Florida Fish and Wildlife
NOAA’s dive page, with underwater obstruction data
Loran tower locations
Ship locations (real time)
Inferring neighborhood boundaries from geocoded flickr photos [...]

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[OS X] Installing MySQL

First, setup the main account…
http://dev.mysql.com/doc/refman/5.0/en/mac-os-x-installation.html
shell> mysql -u root
mysql> SET PASSWORD FOR ”@’localhost’ = PASSWORD(‘newpwd’);
mysql> SET PASSWORD FOR ”@’host_name’ = PASSWORD(‘newpwd’);

Now I have to setup a user account…
mysql> GRANT ALL PRIVILEGES ON *.* TO ‘monty’@'localhost’
-> IDENTIFIED BY ’some_pass’ WITH GRANT OPTION;
mysql> GRANT ALL PRIVILEGES ON *.* TO ‘monty’@'%’
[...]

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